PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_88000g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 691aa    MW: 74890.3 Da    PI: 6.1183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_88000g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07246266526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ GtC++ d+C +aHg
  MA_88000g0010 246 PCPEFRK-GTCRRNDSCEYAHG 266
                    8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029713.602173IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-11193IPR020683Ankyrin repeat-containing domain
CDDcd002047.35E-10176No hitNo description
Gene3DG3DSA:1.25.40.204.1E-10284IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.0223368IPR002110Ankyrin repeat
PRINTSPR014155.8E-53449IPR002110Ankyrin repeat
PfamPF000234.3E-43567IPR002110Ankyrin repeat
PRINTSPR014155.8E-55266IPR002110Ankyrin repeat
SMARTSM003563.9E-5241267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803246268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4246268IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5246266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4273304IPR000571Zinc finger, CCCH-type
SMARTSM0035645276299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MIAALFGSVD VLNYILSTYA THGLDINSGC GSDNSTALHC AAAGGSAHVV ETVKLLIQSG  60
ADANSLDAFG RRPADVIIVS PKLAHARSIL EEMLNVAVGA LLNSSIKFSS IMSDSSFHLP  120
EFVQEEPTNS CGGEYNSSQS VSPFTSPPLS SSPETSYTTS PSLSPNSIEL SKSSCDNNDK  180
KEYPVDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRRF  240
HYSCVPCPEF RKGTCRRNDS CEYAHGVFES WLHPAQYRTR LCKDGTNCAR RVCFFAHKPE  300
ELRPLYLSTG SAVPSPRITA SMDMASLAPG SPSSVLMMSP FSPTNPSKNT LFTPPMSPSS  360
PKSGHSSLAG AWSQSSLPML HLPGGGSQTS RLRATLSARD LPLDDLIRGS DNDGQIIDDF  420
SPLSNQARMN ATLAAALSGD GSTSGKYVSY GLNSVTPVNL EDLFSSEMSL QGVADSEPSV  480
LSHMGTQMPT NNSMQGHSHL QNQKQLSIST QLLQATTQMQ QAATDPQSPG HSFLQSSVLS  540
PSYSLASLGR MSSFSGDFQC HKSNESLLSP VMSPTINSRV TAFSHQDRRS YSSRDLGAHL  600
PPTSSDWGSP TGKLDWGVQG EELSKFRKSL SFGYRNSNEL DSTWIQSMVK EAPKDVQDAS  660
LDYSMETSIN GNIENSDHAV LASWMDEMHL D
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1091930.0BT109193.1 Picea glauca clone GQ03205_L07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S9W30.0A0A0C9S9W3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5835_3235 transcribed RNA sequence
STRINGPOPTR_0001s27370.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-115CCCH-type zinc finger protein with ARM repeat domain